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Thermistor issues

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My OEM thermistor went out, I've been running Repetier for years. I replaced it with the "standard" 100k NTC as is "normal" but not for the Davinci 1.0 apparently. (I've researched this a lot). So I'm up and running again but doubting the temps that the LCD and Repetier are reporting are accurate. I've got the new thermistor attached to the PCB on the extruder cartridge as in OEM. I have not messed eith R29 on the mother board. The hot end is original (for now, I'm working on printing the bits to go E3dV6. Should I bypass the extruder PCB as I understand there's a resistor in there, or is that the R29 on the mother board? I can clip it out. Or leave it alone until after the hot end upgrade?