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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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It shouldn't do this. I'm curious what's going on, since I've sliced it in Makerbot desktop, Replicator, and XYZware and didn't have any issues in any of them.

Sorry, don't have a helpful answer for you. Lemme know if you figure it out!