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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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-are you printing the parts one by one?

  • are you printing the printplate assembly?
    -wich slicer did you use?
    -wich hostsoftware did you use? Brand, pronterface, repetier,..?

you can try, repositioning the part 45or90° and slice again.
or you can try another slicer.
hope this helps