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I just built a spool holder for my bowden set up.. I have angled the motor mount so that your extruder with the bowden tube on both sides dips down to grab the filament right off the spool .. take a look!
http://www.thingiverse.com/thing:561092

and by the way your mounting holes are available on the top. so your extruder mounts perfectly. as soon as I get a new motor and gear I will mount this up and start using it!

Bowden spool holder for with extruder mount many spools supported