MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
I use the Simplify3D slicer, which generates supports that are very easy to remove. You can also select "include supports" in Customizer and it will include some easy to remove supports into the design. Makerware's generated support is much harder to remove.