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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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yeah you should run ti through http://cloud.netfabb.comcloud.netfabb.com, you just upload the broken file, type in your email and send it.
2 minutes later you get a mail with a link, click it and you can download your repaired file.

have fun!