MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
Despite some clogging/extrusion problems it looks like your nozzle is too far away from the bed on the initial layer.
The brim and first layer lines are not closed. This should continue on the other layers as well.
Is your AI3M still stock or did you change anything? Maybe a silent Noctua fan for cooling the coldend?