MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
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I added a screen shot of the design tree as well so hopefully you can make some sense of the table. I plan on redoing the calculations using some different formulas (http://www.thingiverse.com/thing:8382)http://www.thingiverse.com/thi... that look a little cleaner, but that will probably be a while.

Java Gear Generator: Involute and Fillet