MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
They're designed to fit with the battleship hull with a loose fit to make the printing tolerances more manageable. Have you tried combining them in something like Meshmixer to do a fit check? I haven't got an original battleship to compare, however!