MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Here is what works for me in Blender 3D. Select NEW. Delete the default cube. Go to FILE>IMPORT>stl. Navigate to the stl file and import it. For some reason, I need to click ORIGIN>GEOMETRY TO ORIGIN. You may have to zoom the view. Click tab to go to EDIT mode. Select WIREFRAME for view. Hit C for circle select and select some vertices in the column. Right click to turn off circle select. Now hit CTRL-L to select all linked vertices in the column. Hit C again and select some vertices in the capital. Right click out of circle select. Hit CTRL-L to select all linked vertices in the capital. Hit NUMPAD 7 for top view. Now use the drag arrows or CTRL-G to move the entire column to your preferred position. Hit TAB to go to OBJECT mode. Use view SOLID to check your edt. Use FILE>EXPORT>stl to save your edit as an stl file for Printing. Hope this works for you.