MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Sorry for the late reply, I missed the notification until cleaning out my emails.

I ended up using M3 screws for just about everything, maybe one or two M2 screws where necessary. I did drill some holes a little larger to fit the screws since everything was now undersized.