MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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In the meantime I have adjusted my design to fit the SKR 1.3 (and 1.1) board. You can find it here: https://www.thingiverse.com/thing:3558321

Ender 3 Case SKR 1.1 / 1.3 with Raspberry Pi and LM2596