MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
It seems to be dependent on a printer. I am successfully printing even M3 screws and nuts on Prusa MK2 and MK3 using ultra-detail profile. But if a printer is not precise enough to print standard ISO threads, there are always more error-tolerant versions with higher pitch values and deeper teeth, not to mention other alternatives to screws, such as snap-ons etc. :)