MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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After desperately trying to solve this with help of Thorgal, we solved it and printer now works.
The only problem was that two cables of the stepper motors had to be swapped. I thought they are connected as they should, but when I tried and swapped the blue and orange cables, the motor started working perfectly.
Sample of the very first print: https://gyazo.com/52f1066101cb32c59f04a09e88306fcb
Once I have more tests, I'll post my ToyREP in the makes section as well.

Good luck everyone building this printer and thank you Thorgal! :)