MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
Yup! Although I'd still shoot for something a little narrower and deeper. Let us know if it works (or doesn't), though; it'd be worth printing something out built-to-purpose for things like that if there's a generic-enough way it could be done.
The pass-through must be pretty handy.