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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Its very difficult to attain any form of transparency with FDM printing, the print needs to be thin walled, 100% infill and usually have some nefarious post processing to achieve anything like. This is definitely work in progress but I have attached a quick rendered peek at Version 3. Best Boothy