MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
There is configuration.h file in Thing Files if that's what you're looking for. However, it may not work if you just upload it and you may have to edit some things. At reprap wiki there is a manual on how to configure the firmware.