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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Many slicers have such a function to pause the print at a specific height. I use Simplify3D. But cura can do this as well.
Of course you can scale the model to fit your printers bed.