MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
Well I'm still running stock firmware, will be flashing this week some time. I'll post here if I have the same problem.
In any case I'm glad my mod has come in handy. I also greatly prefer this to doing a wipe or a skirt.