MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Well I'm still running stock firmware, will be flashing this week some time. I'll post here if I have the same problem.

In any case I'm glad my mod has come in handy. I also greatly prefer this to doing a wipe or a skirt.