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which sketch version were you using? Does it output something on the serial console when starting up?
Or do the LEDs work and you're having problems with the rtc? Sorry, but it's hard to tell where the problem might be.
One thing I can think off: Is it possible you did wire the buttons wrong? They do have 4 pins and if you're using the wrong side to connect the wires, the sketch will act like if the buttons were pressed all the time.
This would make the clock enter setup and wait for the buttons to be released (which will never happen, basically they are shorted)... but you should see this on the serial console ("entering setup...").