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MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Answering my own questions if people have the same issue, you can put twice the same part on your slicer and move one of the two parts 0.5mm, it will add enough thickness to the part to glue it together with other parts.