MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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No, I exclusively use Simplify3D. The file itself seems to be corrupt. I see the same lines in OGarcia08's make. I tried a couple of different programs to try and repair this and finally Netfabb's online tool did it. I'm about 30 minutes from the end of the print and it looks PERFECT. I'll post pics and a remix of the fixed file.