MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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I sent them feedback, I'd suggest doing the same, maybe someone picks up.

In the meantime, install OpenSCAD, open the *.scad file, press F5/F6/File->Export. Much faster than Customizer anyway.