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Just tried again and watched while printing. I also can see the problem at the slicer preview: within the plate is left a "pit". As soon as the height from the plate is reached, it starts to print the squashballholder above this pit, i.e. there´s a hole where the two "parts" should be connected. I use Simplify 3D V4.

Hole: https://picload.org/view/ddgglwil/squashholder.jpg.html

next layer: https://picload.org/view/ddgglwii/squashholder2.jpg.html