MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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I think my first run was just not as accurate. I did this when I was first going and haven't updated anything. I am going to tweak a V2 out today. Mine is like this as well but it didn't really affect it once the knob was back on so I never adjusted it.