MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.
Not sure. You could either edit the file yourself or maybe bolt one of the pieces to something that can be clamped. If I get some time between work and school, I might give it a try, but it may be faster if someone else with more free time can take a stab at it.