MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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Not sure. You could either edit the file yourself or maybe bolt one of the pieces to something that can be clamped. If I get some time between work and school, I might give it a try, but it may be faster if someone else with more free time can take a stab at it.