MakerBot Print is our newest print-prepration software, which supports native CAD files and STL assemblies,
allows you to interact with all your printers via the Cloud, and many other exciting new features.

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used uniform scaling? with some softwares you can opt between x,y,z, or uniform scaling.
If ure software keeps acting up, download stl, open in meshmixer(free) , go to analasys-measurements.
pick the x, y or z dimention you want to rescale, fill in the value you need, and enter. it should scale uniform. then export stl.
hope this helps.